PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC186_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 249aa    MW: 28184 Da    PI: 8.567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC186_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.68.4e-1768119255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +  hn++Er+RR++iNs f++Lr++lP  +   + kKls  +++ ++v+YI +Lq
  RrC186_p2  68 KLCHNANERNRRKKINSLFSNLRSCLPAsD---QLKKLSIPQTVLRTVKYIPELQ 119
                678*************************66...9999***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.29166118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1567135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-1367123No hitNo description
PfamPF000106.8E-1468119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-1368132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1272124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MCELGPALFP KFGWELTGEH ASYSTNGTSF LDFPVPNTYE VAHHETSLGV SLSSEVNGID  60
NSSVMIKKLC HNANERNRRK KINSLFSNLR SCLPASDQLK KLSIPQTVLR TVKYIPELQE  120
QVKKLSLKKE DLLGRVSGQR DTERYVKTQP QAVASYVSTV FATKHGDNEV MVQISSSKIH  180
KFSIYNVLSG LEEEGFVVVD VSSSSSRGER LFYTLHLQVS KTDNYKLICE ELSQRILYLY  240
EERGNYSFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895060.0AC189506.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746685.11e-166PREDICTED: transcription factor ORG3-like
SwissprotQ9M1K11e-117ORG2_ARATH; Transcription factor ORG2
TrEMBLA0A078BST11e-166A0A078BST1_BRANA; BnaA07g17100D protein
STRINGBra003260.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-112bHLH family protein